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Biotechnology Information microbial genome database
Microbial Genome Database, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/microbial+genome+databases/data+genome+sequencing+whole/pmc13006357-91-7-16
Average 86 stars, based on 1 article reviews
microbial genome database - by Bioz Stars, 2026-11
86/100 stars

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Article Title: Comparative analysis of metagenomic and targeted next-generation sequencing for pathogens diagnosis in bronchoalveolar lavage fluid specimens.
Article Snippet: Secondly, the microbial genome databases were downloaded from RefSeq and WGS in the National Center for Biotechnology Information (https://www.ncbi.nlm.nih.gov/).

Article Title: Metagenomic next-generation sequencing for pulmonary infections diagnosis in patients with diabetes
Article Snippet: The microbial genome databases were downloaded from refseq and genbank in the National Center for Biotechnology Information ( ftp://ftp.ncbi.nlm.nih.gov/genomes/ ).

Article Title: Empyema caused by Eikenella halliae diagnosed by metagenomic next-generation sequencing (mNGS) after pulmonary surgery: A case report
Article Snippet: The remaining reads were finally aligned to the National Center for Biotechnology Information (NCBI) Microbial Genome Databases.

Article Title: Central nervous system nocardiosis diagnosed by metagenomic next-generation sequencing: A case series and literature review.
Article Snippet: For microorganism identification, the remaining reads were then aligned against published microbial genome databases downloaded from the National Center for Biotechnology Information (fttp://ftp.ncbi.nlm.nih. gov/genomes/).

Bacteria:

Article Title: Diagnosis of mixed infection and a primary immunodeficiency disease using next-generation sequencing: a case report
Article Snippet: .. After removing low-complexity reads, the remaining sequences were simultaneously aligned in four microbial genome databases consisting of the genomes or scaffolds from 4945 viruses, 6350 bacteria (including 174 Mycobacterium spp. and 137 Mycoplasma/Chlamydia), 1064 fungi, and 234 parasites downloaded from the National Center for Biotechnology Information (NCBI; ftp://ftp.ncbi.nlm.nih.gov/genomes/ ). ..

Article Title: Metagenomic next-generation sequencing of bronchoalveolar lavage fluid in non-severe and severe pneumonia patients.
Article Snippet: Metagenomic next-generation sequencing (mNGS) is widely used as a more promising technology than conventional tests.. However, its clinical utility in the context of bronchoalveolar lavage fluid (BALF) samples for discriminating between non-severe and severe pneumonia is not well established.. Thus, this study aimed to investigate the diagnostic performance of mNGS on BALF samples from 100 individuals suspected of pneumonia, and compared it with conventional microbiological tests (CMT) of BALF samples and the final clinical diagnosis.

Article Title: Clinical characteristics, diagnosis, outcomes and lung microbiome analysis of invasive pulmonary aspergillosis in the community-acquired pneumonia patients
Article Snippet: .. The remaining data by removal of low-complexity reads were classified by simultaneously aligning to four microbial genome databases (bacteria, fungi, viruses and parasites), which were the National Center for Biotechnology Information ( ftp://ftp.ncbi.nlm.nih.gov/genomes/ ) ..

Article Title: Nocardia otitidiscaviarum meningitis in an immunocompetent patient diagnosed by metagenomic next-generation sequencing: a case report
Article Snippet: .. The remaining data by removal of low-complexity reads were classified by simultaneously aligning to four microbial genome databases (bacteria, fungi, viruses and parasites), which were downloaded from the National Center for Biotechnology Information ( ftp://ftp.ncbi.nlm.nih.gov/genomes/ ). ..

Fungus:

Article Title: Clinical characteristics, diagnosis, outcomes and lung microbiome analysis of invasive pulmonary aspergillosis in the community-acquired pneumonia patients
Article Snippet: .. The remaining data by removal of low-complexity reads were classified by simultaneously aligning to four microbial genome databases (bacteria, fungi, viruses and parasites), which were the National Center for Biotechnology Information ( ftp://ftp.ncbi.nlm.nih.gov/genomes/ ) ..

Parasite:

Article Title: Clinical characteristics, diagnosis, outcomes and lung microbiome analysis of invasive pulmonary aspergillosis in the community-acquired pneumonia patients
Article Snippet: .. The remaining data by removal of low-complexity reads were classified by simultaneously aligning to four microbial genome databases (bacteria, fungi, viruses and parasites), which were the National Center for Biotechnology Information ( ftp://ftp.ncbi.nlm.nih.gov/genomes/ ) ..



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